Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GNT3_chr19_17790138_17818576	0/0	t0037	1572	1	1	0	0	0	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT3_chr19_17790138_17818576	0/0	t0038	1573	1	0	0	0	1	0	copy fasta	B3GNT3	chr19	17790138	17818576
B3GNT4_chr12_122198709_122213952	0/0	t0001	1755	123	1	11	97	3	11	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	1/1	t0002	1755	78	6	23	30	6	11	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0003	1755	35	20	0	15	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0004	1755	30	20	1	9	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0005	1758	30	1	20	5	2	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0006	1755	16	16	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0007	1758	16	0	5	11	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0008	1755	13	10	0	3	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0009	1755	10	0	3	6	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0010	1755	9	9	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0011	1755	8	0	2	0	2	4	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0012	1755	5	0	1	4	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0013	1756	4	0	1	0	3	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0014	1756	3	2	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0015	1756	3	0	2	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0016	1755	2	0	0	0	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0017	1756	2	0	0	0	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0018	1755	2	0	0	2	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0019	1755	2	1	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0020	1755	2	2	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0021	1755	2	0	0	0	0	2	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0022	1755	2	1	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0023	1755	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0024	1755	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0025	1755	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0026	1755	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0027	1755	1	0	0	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0028	1755	1	0	0	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0029	1755	1	0	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0030	1755	1	0	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0031	1756	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0032	1755	1	0	0	1	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0033	1759	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0034	1758	1	1	0	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0035	1758	1	0	1	0	0	0	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0036	1755	1	0	0	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT4_chr12_122198709_122213952	0/0	t0037	1755	1	0	0	0	0	1	copy fasta	B3GNT4	chr12	122198709	122213952
B3GNT5_chr3_183248253_183278385	1/0	t0001	2972	251	55	45	121	9	20	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/1	t0002	2972	76	1	22	38	4	10	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0003	2972	14	13	1	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0004	2972	14	12	1	0	0	1	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0005	2972	10	9	1	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0006	2972	5	0	0	5	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0007	2936	4	0	0	4	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0008	2972	3	0	3	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0009	2972	2	2	0	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0010	2972	2	2	0	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0011	2972	1	1	0	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385