JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF183_chr9_113292093_113308376	0/0	t0007	1276	4	1	0	3	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0008	1275	3	0	0	3	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0009	1276	3	0	0	3	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0010	1268	3	3	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0011	1274	2	2	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0012	1274	2	0	0	2	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0013	1275	2	0	1	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0014	1275	2	0	0	2	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0015	1276	1	0	0	0	0	1	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0016	1274	1	0	0	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0017	1275	1	0	0	1	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0018	1274	1	1	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0019	1274	1	1	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0020	1275	1	1	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0021	1267	1	1	0	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF183_chr9_113292093_113308376	0/0	t0022	1275	1	0	1	0	0	0	copy fasta	RNF183	chr9	113292093	113308376
RNF185_chr22_31155182_31212019	0/0	t0001	2604	91	9	2	71	0	9	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0002	2604	87	12	12	62	0	1	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/1	t0003	2604	56	12	11	12	5	15	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	1/0	t0004	2604	52	1	21	19	6	4	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0005	2604	45	35	7	0	0	3	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0006	2604	11	10	1	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0007	2602	9	0	6	1	1	1	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0008	2602	7	3	3	0	0	1	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0009	2604	3	0	3	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0010	2604	2	0	0	0	0	2	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0011	2604	2	2	0	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0012	2604	2	1	1	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0013	2604	2	0	0	0	2	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0014	2604	1	1	0	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0015	2604	1	0	0	0	0	1	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0016	2602	1	0	1	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0017	2604	1	0	0	1	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0018	2604	1	0	1	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0019	2604	1	0	1	0	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0020	2604	1	0	0	1	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0021	2604	1	0	0	0	0	1	copy fasta	RNF185	chr22	31155182	31212019
RNF185_chr22_31155182_31212019	0/0	t0022	2729	1	0	0	1	0	0	copy fasta	RNF185	chr22	31155182	31212019
RNF186_chr1_19809029_19820283	1/1	t0001	572	347	81	56	146	18	44	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0002	572	63	1	11	51	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0003	572	30	0	7	22	0	1	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0004	572	11	4	0	5	0	2	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0005	572	8	7	1	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0006	572	7	0	3	1	0	3	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0007	572	4	4	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0008	572	2	0	2	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0009	572	1	0	0	1	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0010	572	1	0	0	1	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0011	572	1	1	0	0	0	0	copy fasta	RNF186	chr1	19809029	19820283
RNF186_chr1_19809029_19820283	0/0	t0012	572	1	0	0	1	0	0	copy fasta	RNF186	chr1	19809029	19820283