JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF187_chr1_228482382_228501188	0/0	t0001	2411	148	17	34	79	6	12	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0002	2410	88	26	6	45	2	9	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0003	2410	73	0	17	53	0	3	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0004	2411	31	10	5	11	0	5	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	1/0	t0005	2411	19	3	8	0	5	2	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0006	2410	13	12	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0007	2411	9	8	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0008	2410	5	5	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0009	2411	5	5	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0010	2411	4	4	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0011	2411	4	0	4	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/1	t0012	2411	3	1	0	0	0	1	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0013	2383	2	0	0	0	0	2	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0014	2410	2	2	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0015	2410	2	2	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0016	2411	2	0	0	0	0	2	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0017	2410	1	0	0	0	1	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0018	2410	1	1	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0019	2410	1	1	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0020	2410	1	0	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0021	2411	1	0	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0022	2411	1	1	0	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0023	2411	1	0	0	1	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0024	2411	1	0	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0025	2411	1	0	0	0	0	1	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0026	2411	1	0	0	0	0	1	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0027	2410	1	0	0	1	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF187_chr1_228482382_228501188	0/0	t0028	2411	1	0	1	0	0	0	copy fasta	RNF187	chr1	228482382	228501188
RNF19A_chr8_100252067_100314953	1/1	t0001	1670	276	50	55	126	10	33	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0002	1666	42	17	2	18	0	5	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0003	1670	10	8	2	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0004	1667	6	5	1	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0005	1670	3	0	1	0	2	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0006	1670	3	3	0	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0007	1670	2	0	0	2	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0008	1670	2	0	0	2	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0009	1670	1	1	0	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0010	1670	1	0	1	0	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0011	1670	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0012	1670	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0013	1670	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19A_chr8_100252067_100314953	0/0	t0014	1670	1	0	0	1	0	0	copy fasta	RNF19A	chr8	100252067	100314953
RNF19B_chr1_32931449_32969809	1/1	t0001	482	190	54	37	66	5	26	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	t0002	482	66	2	10	45	2	7	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	t0003	483	47	30	11	2	0	4	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	t0004	481	21	4	2	14	0	1	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	t0005	481	4	0	0	3	1	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	t0006	482	1	0	0	1	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF19B_chr1_32931449_32969809	0/0	t0007	482	1	0	0	1	0	0	copy fasta	RNF19B	chr1	32931449	32969809
RNF207_chr1_6201119_6226299	1/1	t0001	2077	253	33	51	123	15	29	copy fasta	RNF207	chr1	6201119	6226299