JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF207_chr1_6201119_6226299	0/0	t0002	2078	33	15	2	11	0	5	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0003	2077	25	15	2	5	1	2	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0004	2077	12	10	2	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0005	2077	10	9	1	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0006	2077	7	6	1	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0007	2077	6	0	0	6	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0008	2077	3	0	0	3	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0009	2077	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0010	2077	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0011	2077	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0012	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0013	2077	1	0	0	0	0	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0014	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0015	2077	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0016	2077	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0017	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0018	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0019	2078	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0020	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0021	2077	1	1	0	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0022	2077	1	0	0	0	0	1	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0023	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0024	2077	1	0	1	0	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF207_chr1_6201119_6226299	0/0	t0025	2077	1	0	0	1	0	0	copy fasta	RNF207	chr1	6201119	6226299
RNF208_chr9_137215259_137227240	1/1	t0001	947	369	88	71	150	17	41	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0002	947	4	1	1	0	1	1	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0003	947	3	0	3	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0004	947	3	0	0	3	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0005	947	2	0	2	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0006	947	2	0	0	2	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0007	928	2	2	0	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0008	947	1	0	1	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0009	947	1	1	0	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0010	947	1	1	0	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0011	947	1	0	0	1	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF208_chr9_137215259_137227240	0/0	t0012	947	1	1	0	0	0	0	copy fasta	RNF208	chr9	137215259	137227240
RNF20_chr9_101528853_101568344	1/0	t0001	1011	366	82	69	164	15	35	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/1	t0002	1011	19	0	1	13	0	4	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0003	1011	9	0	8	0	0	1	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0004	1011	3	0	0	3	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0005	1011	3	3	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0006	1011	2	0	1	0	1	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0007	1011	1	1	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0008	1011	1	1	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0009	1011	1	0	1	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF20_chr9_101528853_101568344	0/0	t0010	1011	1	1	0	0	0	0	copy fasta	RNF20	chr9	101528853	101568344
RNF212B_chr14_23232936_23278477	0/1	t0001	707	210	73	25	92	9	10	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	1/0	t0002	707	147	23	30	79	7	7	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	t0003	707	7	0	6	0	1	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	t0004	707	1	0	0	0	1	0	copy fasta	RNF212B	chr14	23232936	23278477