JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF212B_chr14_23232936_23278477	0/0	t0005	680	1	0	1	0	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	t0006	697	1	0	0	1	0	0	copy fasta	RNF212B	chr14	23232936	23278477
RNF212B_chr14_23232936_23278477	0/0	t0007	707	1	0	0	0	0	1	copy fasta	RNF212B	chr14	23232936	23278477
RNF212_chr4_1066478_1118564	0/1	t0001	1496	240	57	42	110	5	25	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	1/0	t0002	1497	113	4	27	68	3	10	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0003	1496	24	12	7	0	0	5	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0004	1497	7	7	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0005	1496	4	0	0	0	0	4	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0006	1496	4	3	1	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0007	1524	3	3	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0008	1496	2	0	0	2	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0009	1487	1	0	0	1	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0010	1496	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0011	1497	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0012	1497	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0013	1496	1	1	0	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0014	1496	1	0	0	1	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0015	1496	1	0	0	1	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0016	1496	1	0	1	0	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF212_chr4_1066478_1118564	0/0	t0017	1497	1	0	0	1	0	0	copy fasta	RNF212	chr4	1066478	1118564
RNF213_chr17_80255852_80403794	0/0	t0001	5457	31	0	9	19	0	3	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	1/0	t0002	5456	22	2	5	14	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0003	5461	20	6	2	7	0	5	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0004	5458	16	2	3	5	0	6	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0005	5457	13	0	5	6	0	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0006	5458	11	10	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0007	5461	11	0	1	9	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0008	5462	10	3	1	2	2	2	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0009	5456	10	1	3	5	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0010	5458	10	0	2	7	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0011	5460	9	0	1	8	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0012	5459	7	6	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0013	5461	7	2	0	4	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0014	5460	6	1	4	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0015	5461	6	0	6	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0016	5459	5	4	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0017	5458	4	0	2	0	2	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0018	5458	4	4	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0019	5458	4	0	0	3	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0020	5459	3	1	2	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0021	5459	3	2	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0022	5459	3	2	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0023	5460	3	0	0	3	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0024	5455	3	3	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0025	5456	3	3	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0026	5458	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0027	5455	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0028	5458	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0029	5458	2	0	0	1	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0030	5459	2	1	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794