JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF213_chr17_80255852_80403794	0/0	t0031	5461	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0032	5461	2	0	2	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0033	5461	2	0	2	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0034	5457	2	0	0	2	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0035	5450	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0036	5460	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0037	5458	2	2	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0038	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0039	5459	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0040	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/1	t0041	5459	1	0	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0042	5461	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0043	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0044	5459	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0045	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0046	5462	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0047	5461	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0048	5459	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0049	5457	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0050	5459	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0051	5460	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0052	5457	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0053	5461	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0054	5456	1	0	0	0	1	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0055	5456	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0056	5461	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0057	5461	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0058	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0059	5461	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0060	5457	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0061	5458	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0062	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0063	5492	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0064	5459	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0065	5457	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0066	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0067	5460	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0068	5457	1	0	1	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0069	5456	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0070	5456	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0071	5461	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0072	5449	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0073	5460	1	0	0	0	0	1	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0074	5460	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0075	5457	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0076	5461	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0077	5461	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0078	5461	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0079	5462	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF213_chr17_80255852_80403794	0/0	t0080	5461	1	0	0	1	0	0	copy fasta	RNF213	chr17	80255852	80403794