JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF213_chr17_80255852_80403794	0/0	t0081	5456	1	1	0	0	0	0	copy fasta	RNF213	chr17	80255852	80403794
RNF214_chr11_117227671_117291454	0/1	t0001	1366	283	65	45	127	10	35	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	1/0	t0002	1366	41	11	14	10	5	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0003	1366	18	0	0	12	0	6	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0004	1366	6	2	3	1	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0005	1366	2	2	0	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0006	1366	2	0	1	0	1	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0007	1366	1	0	0	1	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0008	1366	1	1	0	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0009	1366	1	0	1	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0010	1366	1	0	0	0	0	1	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0011	1366	1	0	0	0	0	1	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0012	1366	1	1	0	0	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0013	1366	1	0	0	1	0	0	copy fasta	RNF214	chr11	117227671	117291454
RNF214_chr11_117227671_117291454	0/0	t0014	1366	1	0	0	0	0	1	copy fasta	RNF214	chr11	117227671	117291454
RNF215_chr22_30373821_30392411	1/1	t0001	878	277	45	52	136	12	30	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0002	877	55	8	10	28	3	6	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0003	878	35	9	5	17	1	3	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0004	878	11	11	0	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0005	879	9	1	2	6	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0006	880	9	7	2	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0007	894	8	7	1	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0008	878	7	0	4	0	2	1	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0009	877	5	1	1	2	0	1	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0010	878	3	1	2	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0011	877	2	0	0	0	0	2	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0012	879	2	1	1	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0013	877	2	0	0	2	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0014	895	2	2	0	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0015	876	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0016	878	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0017	877	1	0	0	0	0	1	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0018	878	1	1	0	0	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF215_chr22_30373821_30392411	0/0	t0019	878	1	0	0	1	0	0	copy fasta	RNF215	chr22	30373821	30392411
RNF216_chr7_5615047_5786663	0/1	t0001	3006	135	21	47	42	6	18	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0002	3006	17	1	4	4	1	7	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0003	3014	15	3	3	7	0	2	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0004	3007	9	5	1	1	0	2	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0005	3011	8	8	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0006	3013	8	0	2	3	0	3	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0007	3012	7	7	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0008	3005	7	1	0	4	0	2	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0009	3011	5	5	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0010	3011	4	4	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0011	3011	4	4	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0012	3006	4	4	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0013	3006	3	3	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0014	3011	3	0	0	0	1	2	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0015	3006	3	2	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0016	3006	3	2	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663