JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF216_chr7_5615047_5786663	0/0	t0017	3004	3	3	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0018	3007	3	3	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0019	3011	2	2	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0020	3013	2	0	0	2	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0021	3014	2	0	2	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0022	3012	2	0	2	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	1/0	t0023	3006	2	0	0	0	0	1	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0024	3013	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0025	3013	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0026	3006	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0027	3011	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0028	3012	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0029	3006	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0030	3013	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0031	3012	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0032	3006	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0033	3006	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0034	3006	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0035	3006	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0036	3006	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0037	3006	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0038	3006	1	0	0	0	0	1	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0039	3006	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0040	3006	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0041	3011	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0042	3011	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0043	3006	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0044	3014	1	0	1	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0045	3010	1	1	0	0	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF216_chr7_5615047_5786663	0/0	t0046	3006	1	0	0	1	0	0	copy fasta	RNF216	chr7	5615047	5786663
RNF217_chr6_124957437_125097633	0/0	t0001	9805	58	5	21	24	2	6	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0002	9805	25	0	9	13	0	3	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0003	9801	13	7	2	0	0	4	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0004	9802	11	2	0	6	0	3	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0005	9805	11	0	3	8	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0006	9805	9	9	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	1/0	t0007	9805	9	0	0	5	0	3	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0008	9804	8	7	1	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/1	t0009	9805	8	0	3	1	1	2	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0010	9804	7	7	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0011	9801	6	5	1	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0012	9802	5	0	2	0	1	2	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0013	9805	5	2	1	2	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0014	9805	4	0	0	4	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0015	9802	4	0	0	4	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0016	9804	3	0	0	0	0	3	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0017	9802	3	3	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0018	9804	3	0	0	3	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0019	9805	3	0	0	3	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0020	9806	3	0	3	0	0	0	copy fasta	RNF217	chr6	124957437	125097633