JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF217_chr6_124957437_125097633	0/0	t0071	9804	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0072	9805	1	0	1	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0073	9802	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0074	9802	1	0	0	1	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0075	9804	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0076	9805	1	0	0	1	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0077	9805	1	0	1	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0078	9804	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF217_chr6_124957437_125097633	0/0	t0079	9804	1	1	0	0	0	0	copy fasta	RNF217	chr6	124957437	125097633
RNF220_chr1_44400255_44656723	0/0	t0001	1342	130	44	23	43	9	11	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0002	1342	32	16	3	13	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0003	1342	17	2	4	0	3	8	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0004	1345	8	7	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0005	1342	3	2	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0006	1342	3	0	1	0	0	2	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0007	1345	3	3	0	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0008	1345	3	2	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0009	1348	3	0	1	0	0	2	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0010	1342	2	2	0	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0011	1342	2	0	0	2	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0012	1342	2	0	0	2	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0013	1351	2	1	0	1	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0014	1348	2	0	2	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0015	1342	1	0	0	1	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0016	1342	1	0	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0017	1351	1	0	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0018	1354	1	1	0	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0019	1348	1	0	0	0	0	1	copy fasta	RNF220	chr1	44400255	44656723
RNF220_chr1_44400255_44656723	0/0	t0020	1348	1	0	1	0	0	0	copy fasta	RNF220	chr1	44400255	44656723
RNF222_chr17_8385702_8402827	1/0	t0001	2408	244	41	46	122	11	23	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/1	t0002	2408	63	0	14	36	5	7	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0003	2407	35	20	6	1	1	7	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0004	2408	23	2	1	19	1	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0005	2408	14	11	3	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0006	2408	9	0	0	6	0	3	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0007	2408	8	0	0	7	0	1	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0008	2408	6	6	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0009	2407	4	4	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0010	2408	3	1	1	0	0	1	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0011	2407	3	3	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0012	2408	3	0	0	3	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0013	2408	2	2	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0014	2408	2	0	2	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0015	2408	2	2	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0016	2408	2	2	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0017	2408	1	0	0	1	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0018	2408	1	0	0	0	0	1	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0019	2408	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0020	2408	1	0	1	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0021	2408	1	0	1	0	0	0	copy fasta	RNF222	chr17	8385702	8402827