JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF222_chr17_8385702_8402827	0/0	t0022	2408	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0023	2408	1	0	0	1	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0024	2408	1	0	0	0	0	1	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0025	2408	1	0	1	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0026	2408	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0027	2407	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0028	2407	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF222_chr17_8385702_8402827	0/0	t0029	2407	1	1	0	0	0	0	copy fasta	RNF222	chr17	8385702	8402827
RNF223_chr1_1065967_1079306	0/1	t0001	1151	217	46	46	89	10	25	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	1/0	t0002	1151	39	14	6	6	4	8	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0003	1151	11	0	5	0	4	2	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0004	1151	9	0	0	9	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0005	1151	8	7	1	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0006	1152	7	7	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0007	1151	5	5	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0008	1152	4	0	2	2	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0009	1151	3	3	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0010	1151	3	2	0	1	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0011	1151	3	3	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0012	1151	2	2	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0013	1151	2	2	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0014	1151	1	0	0	1	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0015	1151	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0016	1151	1	0	0	1	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0017	1152	1	0	1	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0018	1151	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0019	1151	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0020	1151	1	0	1	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0021	1151	1	0	0	1	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0022	1121	1	0	0	0	0	1	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0023	1151	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF223_chr1_1065967_1079306	0/0	t0024	1151	1	1	0	0	0	0	copy fasta	RNF223	chr1	1065967	1079306
RNF224_chr9_137222502_137234640	0/1	t0001	1099	251	58	53	107	11	21	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	1/0	t0002	1099	72	26	15	20	1	9	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0003	1099	46	3	10	24	3	6	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0004	1099	6	6	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0005	1099	4	0	0	0	1	3	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0006	1099	3	0	3	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0007	1099	2	2	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0008	1099	1	0	0	1	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0009	1099	1	0	1	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0010	1099	1	0	0	1	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0011	1099	1	0	0	0	1	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0012	1099	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0013	1099	1	0	0	0	1	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0014	1099	1	0	0	0	0	1	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0015	1099	1	0	0	1	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0016	1099	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF224_chr9_137222502_137234640	0/0	t0017	1099	1	1	0	0	0	0	copy fasta	RNF224	chr9	137222502	137234640
RNF225_chr19_58390656_58402079	1/1	t0001	435	175	30	43	71	10	19	copy fasta	RNF225	chr19	58390656	58402079