Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GNT5_chr3_183248253_183278385	0/0	t0012	2972	1	1	0	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0013	2972	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0014	2972	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0015	2972	1	0	0	0	1	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0016	2972	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0017	2972	1	0	0	0	0	1	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0018	2972	1	0	1	0	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT5_chr3_183248253_183278385	0/0	t0019	2972	1	0	0	1	0	0	copy fasta	B3GNT5	chr3	183248253	183278385
B3GNT6_chr11_77029398_77046973	1/0	t0001	1349	112	8	25	59	6	13	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0002	1349	77	7	19	36	3	12	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/1	t0003	1349	73	7	16	35	5	9	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0004	1351	47	26	3	14	0	4	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0005	1350	28	16	9	0	3	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0006	1350	26	3	2	18	0	3	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0007	1350	12	12	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0008	1350	10	0	0	9	1	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0009	1350	7	0	1	6	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0010	1349	6	2	0	4	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0011	1348	4	0	3	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0012	1349	4	4	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0013	1350	3	2	1	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0014	1348	3	0	0	1	0	2	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0015	1349	3	0	0	3	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0016	1351	2	2	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0017	1350	2	0	1	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0018	1348	2	0	1	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0019	1350	2	1	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0020	1349	2	1	1	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0021	1351	2	0	1	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0022	1349	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0023	1349	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0024	1351	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0025	1349	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0026	1350	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0027	1348	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0028	1349	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0029	1349	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0030	1349	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0031	1351	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0032	1350	1	0	0	1	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0033	1349	1	0	1	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0034	1350	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0035	1349	1	0	0	0	0	1	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT6_chr11_77029398_77046973	0/0	t0036	1350	1	1	0	0	0	0	copy fasta	B3GNT6	chr11	77029398	77046973
B3GNT7_chr2_231390710_231406164	1/0	t0001	2334	123	6	30	62	6	18	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0002	2335	89	4	8	66	3	8	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0003	2333	73	7	19	33	5	9	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0004	2334	22	21	1	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0005	2335	19	8	1	4	1	5	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0006	2334	13	8	0	5	0	0	copy fasta	B3GNT7	chr2	231390710	231406164