JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF225_chr19_58390656_58402079	0/0	t0002	435	157	8	34	86	6	23	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0003	435	40	14	5	19	0	2	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0004	435	36	35	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0005	435	4	3	1	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0006	435	3	1	0	2	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0007	435	2	2	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0008	435	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0009	435	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0010	435	1	0	0	1	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0011	562	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF225_chr19_58390656_58402079	0/0	t0012	435	1	1	0	0	0	0	copy fasta	RNF225	chr19	58390656	58402079
RNF227_chr17_7908339_7921289	1/1	t0001	2278	335	57	67	159	10	40	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0002	2278	12	12	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0003	2278	9	9	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0004	2277	7	0	3	0	4	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0005	2278	5	0	4	0	0	1	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0006	2278	4	0	0	4	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0007	2277	3	3	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0008	2277	2	0	0	1	1	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0009	2277	2	0	0	2	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0010	2278	2	2	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0011	2278	2	0	0	2	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0012	2278	2	0	1	0	1	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0013	2277	2	2	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0014	2278	1	0	1	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0015	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0016	2276	1	0	0	0	1	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0017	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0018	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0019	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0020	2278	1	0	1	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0021	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0022	2278	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0023	2278	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0024	2278	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0025	2278	1	0	1	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0026	2278	1	0	0	0	0	1	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0027	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0028	2278	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0029	2278	1	1	0	0	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0030	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0031	2276	1	0	0	0	1	0	copy fasta	RNF227	chr17	7908339	7921289
RNF227_chr17_7908339_7921289	0/0	t0032	2278	1	0	0	1	0	0	copy fasta	RNF227	chr17	7908339	7921289
RNF24_chr20_3922311_4020558	0/0	t0001	6865	50	15	4	21	3	7	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0002	6866	36	1	7	20	3	5	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0003	6881	19	2	4	10	1	2	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0004	6879	15	1	0	11	0	3	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0005	6881	13	0	7	6	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0006	6878	12	1	3	8	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0007	6882	12	0	6	5	0	1	copy fasta	RNF24	chr20	3922311	4020558