JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF24_chr20_3922311_4020558	0/0	t0008	6883	12	6	1	3	0	2	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0009	6884	11	5	2	2	0	2	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0010	6865	10	9	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0011	6878	8	0	0	6	0	2	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0012	6880	5	2	2	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0013	6865	5	0	0	5	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0014	6874	4	3	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0015	6879	4	0	0	4	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	1/0	t0016	6882	4	1	0	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0017	6880	4	0	0	4	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0018	6882	4	0	2	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0019	6884	4	0	0	3	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0020	6885	4	0	0	3	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0021	6882	4	0	1	3	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0022	6885	4	0	2	0	1	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0023	6881	3	0	0	3	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0024	6883	3	0	0	3	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0025	6884	3	0	1	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0026	6883	3	3	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0027	6866	3	0	0	1	0	2	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0028	6882	3	0	1	1	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0029	6868	3	3	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0030	6864	3	0	2	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0031	6865	3	3	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/1	t0032	6878	3	0	2	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0033	6871	2	2	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0034	6866	2	2	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0035	6869	2	0	1	0	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0036	6880	2	0	0	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0037	6883	2	0	1	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0038	6880	2	0	0	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0039	6883	2	0	0	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0040	6878	2	0	0	2	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0041	6880	2	1	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0042	6881	2	0	2	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0043	6882	2	0	0	0	0	2	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0044	6883	2	0	2	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0045	6867	2	1	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0046	6865	2	2	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0047	6866	2	2	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0048	6880	2	0	0	0	2	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0049	6881	2	1	0	0	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0050	6882	2	0	1	0	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0051	6857	2	2	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0052	6880	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0053	6855	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0054	6871	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0055	6881	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0056	6874	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0057	6881	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558