JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF24_chr20_3922311_4020558	0/0	t0058	6865	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0059	6870	1	0	0	0	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0060	6881	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0061	6883	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0062	6878	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0063	6879	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0064	6880	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0065	6880	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0066	6881	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0067	6882	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0068	6879	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0069	6880	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0070	6881	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0071	6881	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0072	6880	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0073	6883	1	0	0	0	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0074	6879	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0075	6880	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0076	6877	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0077	6877	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0078	6879	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0079	6879	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0080	6881	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0081	6882	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0082	6881	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0083	6880	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0084	6882	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0085	6866	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0086	6868	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0087	6865	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0088	6866	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0089	6865	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0090	6866	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0091	6866	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0092	6866	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0093	6869	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0094	6882	1	0	0	1	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0095	6882	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0096	6880	1	0	0	0	0	1	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0097	6881	1	0	1	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0098	6856	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0099	6878	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0100	6881	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF24_chr20_3922311_4020558	0/0	t0101	6882	1	1	0	0	0	0	copy fasta	RNF24	chr20	3922311	4020558
RNF25_chr2_218658892_218677002	1/1	t0001	98	320	94	46	126	12	40	copy fasta	RNF25	chr2	218658892	218677002
RNF26_chr11_119329527_119342309	1/1	t0001	1482	126	29	19	63	4	9	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0002	1481	113	9	10	76	1	17	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0003	1482	108	25	30	40	6	7	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0004	1481	46	18	7	13	2	6	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0005	1482	6	1	4	0	1	0	copy fasta	RNF26	chr11	119329527	119342309