JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF26_chr11_119329527_119342309	0/0	t0006	1481	5	5	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0007	1483	3	0	3	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0008	1482	2	0	0	2	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0009	1482	2	2	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0010	1482	2	0	1	0	0	1	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0011	1482	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0012	1482	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0013	1438	1	0	0	0	1	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0014	1482	1	1	0	0	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0015	1482	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0016	1482	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0017	1482	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0018	1481	1	0	0	1	0	0	copy fasta	RNF26	chr11	119329527	119342309
RNF26_chr11_119329527_119342309	0/0	t0019	1481	1	0	0	0	1	0	copy fasta	RNF26	chr11	119329527	119342309
RNF2_chr1_185040558_185107603	0/1	t0001	2396	56	8	20	17	2	8	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0002	2396	55	12	10	30	1	2	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0003	2401	54	12	17	13	3	9	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	1/0	t0004	2397	51	4	7	33	0	6	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0005	2397	23	2	4	16	0	1	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0006	2402	18	9	5	3	1	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0007	2397	11	0	2	9	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0008	2399	10	10	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0009	2400	8	0	0	7	0	1	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0010	2400	7	4	3	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0011	2396	7	0	0	7	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0012	2398	5	4	1	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0013	2398	4	1	1	1	1	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0014	2403	4	4	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0015	2397	4	0	0	4	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0016	2396	3	3	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0017	2398	3	0	3	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0018	2401	2	2	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0019	2398	2	0	0	2	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0020	2398	2	1	0	0	0	1	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0021	2401	2	0	0	2	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0022	2399	2	2	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0023	2400	2	2	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0024	2396	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0025	2397	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0026	2400	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0027	2397	1	0	0	1	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0028	2397	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0029	2393	1	0	1	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0030	2395	1	0	0	1	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0031	2398	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0032	2399	1	0	0	1	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0033	2399	1	0	0	1	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0034	2402	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0035	2399	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0036	2399	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603