JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF2_chr1_185040558_185107603	0/0	t0037	2400	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF2_chr1_185040558_185107603	0/0	t0038	2400	1	1	0	0	0	0	copy fasta	RNF2	chr1	185040558	185107603
RNF31_chr14_24142498_24165655	0/0	t0001	284	219	35	34	125	8	17	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	1/1	t0002	284	202	45	38	78	10	29	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	t0003	284	21	16	2	0	0	3	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	t0004	284	1	0	0	0	0	1	copy fasta	RNF31	chr14	24142498	24165655
RNF31_chr14_24142498_24165655	0/0	t0005	284	1	0	0	1	0	0	copy fasta	RNF31	chr14	24142498	24165655
RNF32_chr7_156635774_156682130	0/0	t0001	591	166	42	26	82	7	9	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	1/1	t0002	591	156	22	35	56	8	33	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	t0003	591	50	7	6	34	0	3	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	t0004	591	45	9	2	30	1	3	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	t0005	591	19	2	1	16	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	t0006	591	10	10	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF32_chr7_156635774_156682130	0/0	t0007	591	2	2	0	0	0	0	copy fasta	RNF32	chr7	156635774	156682130
RNF34_chr12_121395118_121429348	1/1	t0001	868	261	37	45	134	11	32	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	t0002	868	83	41	14	20	1	7	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	t0003	868	4	4	0	0	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	t0004	868	1	0	1	0	0	0	copy fasta	RNF34	chr12	121395118	121429348
RNF34_chr12_121395118_121429348	0/0	t0005	868	1	0	0	0	0	1	copy fasta	RNF34	chr12	121395118	121429348
RNF38_chr9_36331400_36405269	0/1	t0001	3514	269	60	43	133	3	29	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0002	3515	56	1	13	27	7	8	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0003	3515	29	0	17	7	2	3	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0004	3515	9	8	1	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0005	3514	8	8	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0006	3514	4	4	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0007	3514	4	0	0	4	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0008	3511	3	3	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0009	3515	3	0	0	0	2	1	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0010	3514	2	2	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0011	3514	2	0	0	2	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0012	3514	1	1	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0013	3514	1	1	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0014	3515	1	0	0	0	0	1	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0015	3514	1	1	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0016	3514	1	0	1	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0017	3514	1	0	0	1	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0018	3514	1	0	0	1	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0019	3514	1	0	0	1	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0020	3515	1	0	0	1	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0021	3515	1	1	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0022	3515	1	0	0	1	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	1/0	t0023	3514	1	0	0	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF38_chr9_36331400_36405269	0/0	t0024	3514	1	0	1	0	0	0	copy fasta	RNF38	chr9	36331400	36405269
RNF39_chr6_30065270_30080769	0/0	t0001	1026	192	37	51	75	4	25	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/1	t0002	1026	106	9	6	73	6	11	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0003	1021	76	17	10	42	1	6	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0004	1021	31	5	2	18	5	1	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0005	1021	13	13	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0006	1026	8	7	1	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0007	1021	6	3	1	2	0	0	copy fasta	RNF39	chr6	30065270	30080769