JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF39_chr6_30065270_30080769	0/0	t0008	1026	4	0	3	0	1	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0009	1026	2	0	2	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0010	1026	2	0	2	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0011	1026	2	0	0	0	0	2	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0012	1021	2	0	0	1	0	1	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0013	1026	1	0	0	1	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0014	1021	1	0	0	1	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0015	1026	1	0	1	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0016	1026	1	0	0	1	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0017	1026	1	1	0	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0018	1026	1	0	1	0	0	0	copy fasta	RNF39	chr6	30065270	30080769
RNF39_chr6_30065270_30080769	0/0	t0019	1026	1	0	0	0	1	0	copy fasta	RNF39	chr6	30065270	30080769
RNF40_chr16_30757322_30781307	0/0	t0001	2304	102	46	16	19	4	17	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/1	t0002	2304	90	4	31	42	5	7	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0003	2304	11	2	7	0	2	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	1/0	t0004	2304	8	6	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0005	2303	4	4	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0006	2304	3	3	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0007	2304	2	1	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0008	2304	1	0	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0009	2304	1	0	0	0	1	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0010	2304	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0011	2304	1	0	1	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0012	2304	1	1	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0013	2304	1	1	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0014	2304	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0015	2304	1	0	0	1	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0016	2304	1	1	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF40_chr16_30757322_30781307	0/0	t0017	2304	1	1	0	0	0	0	copy fasta	RNF40	chr16	30757322	30781307
RNF41_chr12_56197179_56226922	0/1	t0001	4638	182	20	37	101	9	14	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0002	4639	22	11	4	3	1	3	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0003	4638	20	0	5	15	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0004	4639	11	11	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0005	4639	7	1	2	4	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0006	4639	6	0	4	0	0	2	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0007	4639	5	5	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0008	4638	5	5	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	1/0	t0009	4640	4	3	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0010	4638	4	0	0	4	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0011	4638	3	0	0	3	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0012	4640	3	0	0	3	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0013	4637	3	1	0	2	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0014	4638	3	3	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0015	4638	3	3	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0016	4640	2	1	1	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0017	4640	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0018	4639	2	0	0	1	1	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0019	4639	2	0	1	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0020	4637	2	0	0	2	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0021	4636	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922