JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF41_chr12_56197179_56226922	0/0	t0022	4639	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0023	4639	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0024	4638	2	2	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0025	4641	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0026	4639	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0027	4639	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0028	4641	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0029	4640	1	0	1	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0030	4640	1	0	0	0	0	1	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0031	4642	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0032	4642	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0033	4641	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0034	4639	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0035	4640	1	0	0	0	0	1	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0036	4642	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0037	4638	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0038	4637	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0039	4638	1	0	1	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0040	4638	1	0	0	0	0	1	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0041	4638	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0042	4638	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0043	4638	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0044	4637	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0045	4640	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0046	4638	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0047	4638	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0048	4638	1	0	0	1	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0049	4639	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0050	4638	1	0	0	0	1	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0051	4638	1	0	1	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0052	4641	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0053	4639	1	0	1	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0054	4638	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0055	4639	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0056	4639	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0057	4641	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0058	4639	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0059	4639	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0060	4637	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF41_chr12_56197179_56226922	0/0	t0061	4638	1	1	0	0	0	0	copy fasta	RNF41	chr12	56197179	56226922
RNF43_chr17_58348676_58422534	1/1	t0001	2171	237	55	45	97	6	32	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0002	2171	65	10	9	39	3	4	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0003	2171	22	3	15	0	3	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0004	2171	9	5	1	0	2	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0005	2171	5	5	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0006	2171	3	0	0	3	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0007	2171	2	0	2	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0008	2171	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0009	2171	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0010	2171	1	0	0	0	0	1	copy fasta	RNF43	chr17	58348676	58422534