JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF43_chr17_58348676_58422534	0/0	t0011	2171	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0012	2171	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0013	2171	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0014	2171	1	0	0	0	0	1	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0015	2171	1	0	0	1	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF43_chr17_58348676_58422534	0/0	t0016	2171	1	1	0	0	0	0	copy fasta	RNF43	chr17	58348676	58422534
RNF44_chr5_176521712_176542402	0/1	t0001	2824	207	47	36	92	10	21	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0002	2823	42	9	5	26	2	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0003	2825	40	9	14	10	1	6	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0004	2826	26	0	1	25	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0005	2825	22	0	10	5	2	5	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0006	2825	13	0	0	12	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0007	2824	12	0	2	10	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	1/0	t0008	2824	11	2	2	2	0	4	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0009	2824	6	4	1	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0010	2824	6	6	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0011	2824	5	0	0	5	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0012	2825	5	0	1	4	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0013	2824	5	5	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0014	2824	5	1	2	0	1	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0015	2825	3	0	0	0	0	3	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0016	2825	3	0	3	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0017	2825	3	2	1	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0018	2825	3	3	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0019	2826	2	0	0	2	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0020	2824	2	0	0	2	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0021	2824	2	2	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0022	2824	2	2	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0023	2826	1	0	0	0	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0024	2826	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0025	2825	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0026	2824	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0027	2825	1	0	1	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0028	2825	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0029	2825	1	0	0	0	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0030	2824	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0031	2824	1	0	0	0	0	1	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0032	2786	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0033	2824	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0034	2824	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0035	2824	1	0	1	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0036	2824	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0037	2824	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0038	2824	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0039	2824	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0040	2824	1	1	0	0	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF44_chr5_176521712_176542402	0/0	t0041	2823	1	0	0	1	0	0	copy fasta	RNF44	chr5	176521712	176542402
RNF4_chr4_2464106_2520857	0/0	t0001	2348	169	29	37	72	8	23	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/1	t0002	2348	54	3	15	23	6	6	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0003	2349	41	13	4	21	1	2	copy fasta	RNF4	chr4	2464106	2520857