JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF4_chr4_2464106_2520857	0/0	t0004	2349	22	3	0	18	0	1	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0005	2348	14	2	4	2	0	6	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0006	2346	14	14	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	1/0	t0007	2349	13	7	0	2	0	3	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0008	2348	10	0	0	10	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0009	2349	6	6	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0010	2348	5	3	0	1	1	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0011	2348	4	4	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0012	2349	3	0	0	0	1	2	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0013	2348	2	2	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0014	2348	2	1	1	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0015	2348	2	2	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0016	2346	1	1	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0017	2348	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0018	2348	1	0	0	0	0	1	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0019	2348	1	0	1	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0020	2348	1	1	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0021	2348	1	0	1	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0022	2349	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0023	2348	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0024	2348	1	0	0	0	1	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0025	2348	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0026	2348	1	0	1	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0027	2348	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0028	2348	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0029	2348	1	1	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0030	2349	1	0	0	1	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0031	2349	1	1	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF4_chr4_2464106_2520857	0/0	t0032	2348	1	1	0	0	0	0	copy fasta	RNF4	chr4	2464106	2520857
RNF5_chr6_32173405_32185793	0/1	t0001	575	390	81	76	184	12	36	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	t0002	575	52	16	4	18	4	10	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	t0003	575	2	0	0	2	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	t0004	575	1	1	0	0	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	t0005	575	1	0	0	1	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF5_chr6_32173405_32185793	0/0	t0006	575	1	0	0	1	0	0	copy fasta	RNF5	chr6	32173405	32185793
RNF6_chr13_26207775_26227314	1/1	t0001	1463	216	60	31	98	7	18	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0002	1463	140	7	35	69	9	20	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0003	1463	19	2	5	10	0	2	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0004	1460	11	11	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0005	1463	4	4	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0006	1466	3	3	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0007	1461	3	0	0	3	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0008	1463	3	1	0	2	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0009	1463	2	0	0	2	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0010	1463	2	2	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0011	1463	1	0	0	0	0	1	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0012	1463	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0013	1463	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0014	1463	1	0	0	1	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0015	1463	1	0	1	0	0	0	copy fasta	RNF6	chr13	26207775	26227314