JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF6_chr13_26207775_26227314	0/0	t0016	1451	1	0	0	0	0	1	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0017	1451	1	0	0	0	0	1	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0018	1463	1	0	0	0	0	1	copy fasta	RNF6	chr13	26207775	26227314
RNF6_chr13_26207775_26227314	0/0	t0019	1463	1	1	0	0	0	0	copy fasta	RNF6	chr13	26207775	26227314
RNF7_chr3_141733298_141752560	1/0	t0001	2328	191	14	31	109	12	24	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/1	t0002	2328	32	8	9	7	0	7	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0003	2319	19	3	3	8	0	5	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0004	2328	17	13	4	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0005	2329	17	12	1	4	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0006	2323	16	0	3	11	0	2	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0007	2329	14	11	3	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0008	2326	13	10	3	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0009	2328	9	0	2	6	1	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0010	2328	8	7	0	0	0	1	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0011	2329	7	0	0	7	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0012	2328	7	0	0	7	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0013	2324	3	3	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0014	2324	3	1	0	2	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0015	2314	3	0	0	3	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0016	2329	2	0	1	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0017	2327	2	2	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0018	2328	2	0	0	2	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0019	2328	2	2	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0020	2328	2	2	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0021	2328	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0022	2322	1	1	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0023	2327	1	0	1	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0024	2326	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0025	2328	1	0	0	0	1	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0026	2328	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0027	2328	1	0	1	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0028	2326	1	1	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0029	2328	1	0	0	0	0	1	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0030	2328	1	1	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0031	2323	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0032	2323	1	1	0	0	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0033	2276	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0034	2319	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF7_chr3_141733298_141752560	0/0	t0035	2320	1	0	0	1	0	0	copy fasta	RNF7	chr3	141733298	141752560
RNF8_chr6_37348983_37399734	1/1	t0001	4159	143	8	36	69	6	22	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0002	4159	49	13	8	25	0	3	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0003	4159	28	9	0	19	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0004	4159	23	21	2	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0005	4159	16	15	1	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0006	4159	12	1	7	2	1	1	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0007	4159	11	3	3	5	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0008	4159	10	9	1	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0009	4159	5	5	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0010	4159	4	0	0	2	1	1	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0011	4159	3	0	0	3	0	0	copy fasta	RNF8	chr6	37348983	37399734