Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GNT7_chr2_231390710_231406164	0/0	t0007	2335	11	1	1	6	0	3	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/1	t0008	2336	10	0	1	6	0	2	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0009	2334	8	2	2	4	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0010	2334	5	5	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0011	2333	4	0	1	1	1	1	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0012	2334	4	3	1	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0013	2333	3	3	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0014	2335	3	3	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0015	2332	3	0	0	2	0	1	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0016	2334	3	3	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0017	2335	3	3	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0018	2334	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0019	2335	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0020	2335	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0021	2332	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0022	2334	2	2	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0023	2333	2	0	0	2	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0024	2334	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0025	2333	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0026	2333	1	0	0	0	0	1	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0027	2335	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0028	2335	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0029	2336	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0030	2336	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0031	2335	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0032	2335	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0033	2336	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0034	2332	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0035	2333	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0036	2333	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0037	2333	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0038	2334	1	1	0	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0039	2332	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0040	2334	1	0	0	1	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT7_chr2_231390710_231406164	0/0	t0041	2333	1	0	1	0	0	0	copy fasta	B3GNT7	chr2	231390710	231406164
B3GNT8_chr19_41420359_41432374	0/1	t0001	362	224	57	39	86	12	29	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	1/0	t0002	350	173	20	34	98	4	16	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0003	362	15	14	1	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0004	362	3	3	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0005	350	1	0	0	0	0	1	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0006	362	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0007	362	1	0	0	1	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0008	350	1	0	0	1	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT8_chr19_41420359_41432374	0/0	t0009	362	1	1	0	0	0	0	copy fasta	B3GNT8	chr19	41420359	41432374
B3GNT9_chr16_67143104_67155998	1/1	t0001	1494	304	77	53	121	10	41	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0002	1478	21	13	1	5	0	2	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0003	1494	3	3	0	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0004	1494	2	0	2	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0005	1494	2	2	0	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0006	1494	2	0	0	0	0	2	copy fasta	B3GNT9	chr16	67143104	67155998