JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNF8_chr6_37348983_37399734	0/0	t0012	4159	3	3	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0013	4159	2	2	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0014	4159	2	0	0	2	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0015	4159	2	2	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0016	4159	2	2	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0017	4159	2	0	0	2	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0018	4159	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0019	4159	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0020	4159	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0021	4159	1	0	0	0	0	1	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0022	4159	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0023	4159	1	0	0	1	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNF8_chr6_37348983_37399734	0/0	t0024	4159	1	1	0	0	0	0	copy fasta	RNF8	chr6	37348983	37399734
RNFT1_chr17_59947240_59969740	1/1	t0001	815	323	86	58	144	3	30	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	t0002	819	6	0	2	0	1	3	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	t0003	815	3	0	0	0	0	3	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	t0004	815	2	0	0	2	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	t0005	815	1	1	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT1_chr17_59947240_59969740	0/0	t0006	815	1	1	0	0	0	0	copy fasta	RNFT1	chr17	59947240	59969740
RNFT2_chr12_116733315_116858631	0/1	t0001	4414	64	3	21	31	0	8	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0002	4403	36	17	4	15	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0003	4407	16	0	0	14	0	2	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0004	4393	14	4	0	4	0	6	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0005	4408	12	11	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	1/0	t0006	4393	9	0	1	1	1	5	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0007	4393	7	0	0	5	0	2	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0008	4380	5	5	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0009	4407	5	0	2	0	0	3	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0010	4402	5	2	0	3	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0011	4403	5	5	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0012	4415	4	0	3	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0013	4406	4	4	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0014	4404	4	3	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0015	4413	3	0	0	2	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0016	4409	3	2	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0017	4414	3	0	0	3	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0018	4390	3	2	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0019	4412	3	1	1	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0020	4402	2	2	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0021	4407	2	2	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0022	4415	2	0	1	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0023	4410	2	2	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0024	4415	2	0	0	1	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0025	4390	2	2	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0026	4394	2	0	0	0	0	2	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0027	4406	2	1	0	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0028	4407	2	0	0	2	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0029	4408	2	0	0	1	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0030	4406	2	2	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0031	4403	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631