JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNFT2_chr12_116733315_116858631	0/0	t0032	4403	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0033	4407	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0034	4408	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0035	4408	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0036	4408	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0037	4409	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0038	4414	1	0	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0039	4411	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0040	4410	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0041	4392	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0042	4394	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0043	4394	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0044	4401	1	0	0	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0045	4380	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0046	4389	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0047	4393	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0048	4393	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0049	4393	1	0	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0050	4391	1	0	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0051	4391	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0052	4398	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0053	4400	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0054	4406	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0055	4407	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0056	4410	1	0	0	0	1	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0057	4414	1	0	0	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0058	4407	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0059	4406	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0060	4407	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0061	4407	1	0	0	1	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0062	4402	1	0	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0063	4402	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0064	4402	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0065	4402	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0066	4404	1	0	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0067	4405	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0068	4404	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0069	4404	1	0	1	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0070	4396	1	1	0	0	0	0	copy fasta	RNFT2	chr12	116733315	116858631
RNFT2_chr12_116733315_116858631	0/0	t0071	4403	1	0	0	0	0	1	copy fasta	RNFT2	chr12	116733315	116858631
RNGTT_chr6_88604897_88968618	1/1	t0001	3032	106	21	23	37	8	15	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0002	3032	50	20	9	18	1	2	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0003	3012	24	4	5	10	1	4	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0004	3032	12	11	1	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0005	3030	9	9	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0006	3031	5	5	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0007	3012	3	2	1	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0008	3032	2	2	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0009	3032	2	1	1	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0010	3032	1	0	1	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618