JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNGTT_chr6_88604897_88968618	0/0	t0011	3032	1	1	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0012	3032	1	1	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0013	3031	1	0	0	0	0	1	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0014	3012	1	0	1	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0015	3032	1	0	0	1	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNGTT_chr6_88604897_88968618	0/0	t0016	3032	1	1	0	0	0	0	copy fasta	RNGTT	chr6	88604897	88968618
RNH1_chr11_489515_512242	0/0	t0001	567	271	57	49	117	11	37	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0002	567	87	31	11	34	3	8	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/1	t0003	567	20	0	16	0	2	1	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0004	567	3	2	1	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0005	567	1	1	0	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0006	567	1	0	1	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0007	567	1	1	0	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0008	567	1	0	0	1	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0009	567	1	1	0	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNH1_chr11_489515_512242	0/0	t0010	567	1	1	0	0	0	0	copy fasta	RNH1	chr11	489515	512242
RNLS_chr10_88279102_88588318	0/0	t0001	1381	121	12	31	48	11	19	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0002	1381	70	25	15	23	1	6	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0003	1381	32	4	10	15	2	1	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0004	1378	3	0	0	3	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0005	1381	2	0	0	2	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0006	1381	2	2	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0007	1381	1	0	0	1	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNLS_chr10_88279102_88588318	0/0	t0008	1381	1	1	0	0	0	0	copy fasta	RNLS	chr10	88279102	88588318
RNMT_chr18_13721673_13769556	0/1	t0001	4806	184	18	29	110	7	19	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0002	4806	53	10	13	18	6	6	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	1/0	t0003	4806	25	7	5	5	0	7	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0004	4806	10	10	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0005	4806	10	10	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0006	4806	10	0	8	2	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0007	4806	9	1	4	0	0	4	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0008	4806	9	9	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0009	4806	7	0	7	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0010	4806	6	2	0	2	0	2	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0011	4806	4	2	0	2	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0012	4806	3	0	0	3	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0013	4806	3	0	0	3	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0014	4806	3	0	0	3	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0015	4806	3	1	0	0	0	2	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0016	4806	3	3	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0017	4806	3	3	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0018	4806	2	0	0	2	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0019	4806	2	0	0	0	0	2	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0020	4806	2	1	1	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0021	4806	2	0	0	2	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0022	4806	2	0	2	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0023	4806	2	2	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0024	4806	2	2	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0025	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0026	4806	1	0	0	0	1	0	copy fasta	RNMT	chr18	13721673	13769556