JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNMT_chr18_13721673_13769556	0/0	t0027	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0028	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0029	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0030	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0031	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0032	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0033	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0034	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0035	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0036	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0037	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0038	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0039	4806	1	0	0	1	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0040	4806	1	1	0	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNMT_chr18_13721673_13769556	0/0	t0041	4806	1	0	1	0	0	0	copy fasta	RNMT	chr18	13721673	13769556
RNPC3_chr1_103520699_103560239	1/1	t0001	591	302	56	61	146	11	26	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	t0002	591	64	37	16	0	5	6	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	t0003	591	1	0	0	1	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	t0004	591	1	0	0	1	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	t0005	591	1	1	0	0	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPC3_chr1_103520699_103560239	0/0	t0006	591	1	0	1	0	0	0	copy fasta	RNPC3	chr1	103520699	103560239
RNPEPL1_chr2_240563484_240586372	0/1	t0001	3584	202	29	40	90	12	30	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0002	3589	70	8	10	51	1	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	1/0	t0003	3584	36	15	14	1	0	5	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0004	3582	16	0	5	4	1	6	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0005	3584	8	8	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0006	3584	7	6	1	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0007	3584	7	7	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0008	3584	6	6	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0009	3584	5	3	2	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0010	3584	4	4	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0011	3584	3	0	2	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0012	3584	3	3	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0013	3584	3	2	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0014	3584	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0015	3584	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0016	3584	2	2	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0017	3584	2	0	0	0	0	2	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0018	3582	2	0	2	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0019	3584	2	0	0	2	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0020	3584	2	0	0	2	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0021	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0022	3589	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0023	2022	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0024	3589	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0025	3589	1	0	1	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0026	3582	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0027	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0028	3584	1	0	0	0	0	1	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0029	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372