JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RNPEPL1_chr2_240563484_240586372	0/0	t0030	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0031	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0032	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0033	3589	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0034	3584	1	1	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0035	3584	1	1	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0036	3584	1	0	0	1	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0037	3584	1	0	1	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEPL1_chr2_240563484_240586372	0/0	t0038	3584	1	1	0	0	0	0	copy fasta	RNPEPL1	chr2	240563484	240586372
RNPEP_chr1_201977648_202011143	1/0	t0001	447	287	81	69	104	7	25	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/1	t0002	443	157	17	15	94	9	21	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	t0003	447	7	2	0	5	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	t0004	443	2	0	0	2	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPEP_chr1_201977648_202011143	0/0	t0005	447	1	0	0	1	0	0	copy fasta	RNPEP	chr1	201977648	202011143
RNPS1_chr16_2248120_2273126	1/0	t0001	1034	175	39	29	82	5	19	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0002	1034	146	28	30	64	6	18	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/1	t0003	1034	27	10	10	1	2	3	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0004	1034	8	7	1	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0005	1034	4	4	0	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0006	1034	2	0	0	1	1	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0007	1034	2	2	0	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0008	1034	1	0	0	1	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0009	1034	1	0	0	1	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0010	1034	1	1	0	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0011	1034	1	0	0	1	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0012	1034	1	0	0	0	0	1	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0013	1034	1	0	0	1	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0014	1034	1	0	0	1	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0015	1034	1	0	0	0	0	1	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0016	1034	1	0	0	1	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RNPS1_chr16_2248120_2273126	0/0	t0017	1034	1	1	0	0	0	0	copy fasta	RNPS1	chr16	2248120	2273126
RO60_chr1_193054612_193096219	1/1	t0001	6675	70	3	11	39	3	12	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0002	6673	54	1	8	31	5	9	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0003	6673	34	15	8	9	1	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0004	6676	29	14	7	7	0	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0005	6674	13	0	5	5	2	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0006	6671	12	0	3	9	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0007	6672	8	8	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0008	6672	7	0	0	6	0	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0009	6673	7	1	5	0	1	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0010	6675	6	0	1	5	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0011	6676	5	5	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0012	6675	4	4	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0013	6674	3	1	1	0	0	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0014	6673	3	3	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0015	6673	3	2	1	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0016	6670	3	3	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0017	6672	2	0	0	1	0	1	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0018	6672	2	1	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0019	6673	2	0	0	2	0	0	copy fasta	RO60	chr1	193054612	193096219