JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RO60_chr1_193054612_193096219	0/0	t0070	6675	1	1	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0071	6677	1	1	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0072	6677	1	1	0	0	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0073	6673	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0074	6672	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0075	6672	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0076	6673	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0077	6673	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
RO60_chr1_193054612_193096219	0/0	t0078	6673	1	0	0	1	0	0	copy fasta	RO60	chr1	193054612	193096219
ROBO1_chr3_78592239_79772998	0/0	t0001	1972	11	8	3	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0002	1974	6	4	1	0	0	1	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0003	1972	5	5	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0004	1973	4	4	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0005	1976	3	2	1	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0006	1973	3	3	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0007	1972	2	2	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0008	1972	1	0	1	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0009	1972	1	0	0	0	0	1	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0010	1973	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0011	1975	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0012	1971	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0013	1972	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0014	1976	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0015	1972	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0016	1973	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO1_chr3_78592239_79772998	0/0	t0017	1973	1	1	0	0	0	0	copy fasta	ROBO1	chr3	78592239	79772998
ROBO2_chr3_77035099_77654964	0/0	t0001	4597	30	4	10	9	2	5	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0002	4597	23	14	2	5	1	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0003	4597	13	4	4	4	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0004	4597	12	1	0	9	0	2	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0005	4597	11	6	1	3	1	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0006	4597	10	2	1	4	1	2	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0007	4597	6	4	0	2	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0008	4597	4	0	1	2	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0009	4597	4	0	1	2	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0010	4597	4	0	1	3	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0011	4612	3	2	1	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0012	4597	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0013	4597	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0014	4597	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0015	4597	2	2	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0016	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0017	4597	1	0	1	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0018	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0019	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0020	4597	1	0	0	1	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0021	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0022	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0023	4597	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0024	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964