JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ROBO2_chr3_77035099_77654964	0/0	t0025	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0026	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0027	4597	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0028	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0029	4597	1	0	1	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0030	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0031	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0032	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0033	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0034	4597	1	0	0	1	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0035	4597	1	0	0	1	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0036	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0037	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0038	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0039	4597	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0040	4597	1	0	1	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0041	4597	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0042	4597	1	0	0	1	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0043	4597	1	1	0	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0044	4597	1	0	1	0	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0045	4597	1	0	0	0	1	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0046	4597	1	0	0	0	0	1	copy fasta	ROBO2	chr3	77035099	77654964
ROBO2_chr3_77035099_77654964	0/0	t0047	4597	1	0	0	1	0	0	copy fasta	ROBO2	chr3	77035099	77654964
ROBO3_chr11_124860432_124886471	1/1	t0001	368	398	88	80	168	14	46	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	t0002	368	2	2	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	t0003	368	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO3_chr11_124860432_124886471	0/0	t0004	368	1	1	0	0	0	0	copy fasta	ROBO3	chr11	124860432	124886471
ROBO4_chr11_124878691_124902865	1/1	t0001	1271	282	50	44	155	4	27	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0002	1271	40	11	20	0	5	4	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0003	1271	22	20	2	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0004	1271	20	1	2	11	1	5	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0005	1271	7	5	1	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0006	1271	4	0	0	4	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0007	1271	4	3	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0008	1271	3	0	1	0	2	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0009	1271	2	0	0	2	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0010	1271	2	0	0	2	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0011	1271	2	0	0	0	0	2	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0012	1271	2	2	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0013	1271	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0014	1271	1	0	1	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0015	1271	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0016	1271	1	0	0	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0017	1271	1	0	0	1	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0018	1271	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0019	1271	1	0	0	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0020	1271	1	0	0	0	0	1	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0021	1271	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROBO4_chr11_124878691_124902865	0/0	t0022	1271	1	1	0	0	0	0	copy fasta	ROBO4	chr11	124878691	124902865
ROCK1_chr18_20941906_21116813	0/0	t0001	5382	66	27	14	23	1	1	copy fasta	ROCK1	chr18	20941906	21116813