JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ROCK1_chr18_20941906_21116813	1/1	t0002	5382	44	9	8	20	1	4	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0003	5382	38	3	9	19	1	6	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0004	5383	8	8	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0005	5382	6	0	0	6	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0006	5382	5	5	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0007	5382	5	4	1	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0008	5383	4	4	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0009	5382	4	4	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0010	5383	4	4	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0011	5382	2	2	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0012	5382	2	0	0	1	0	1	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0013	5382	2	0	1	0	1	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0014	5383	2	0	0	2	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0015	5383	2	0	0	2	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0016	5378	2	2	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0017	5382	2	0	2	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0018	5382	1	0	0	1	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0019	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0020	5382	1	0	0	0	0	1	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0021	5382	1	0	0	1	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0022	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0023	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0024	5382	1	0	0	1	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0025	5382	1	0	1	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0026	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0027	5382	1	0	0	0	0	1	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0028	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0029	5383	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0030	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK1_chr18_20941906_21116813	0/0	t0031	5382	1	1	0	0	0	0	copy fasta	ROCK1	chr18	20941906	21116813
ROCK2_chr2_11174759_11349636	0/0	t0001	4175	58	3	10	37	2	6	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0002	4188	57	7	4	36	4	6	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/1	t0003	4190	22	1	3	13	1	3	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0004	4175	22	18	3	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0005	4177	15	0	7	0	1	7	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0006	4180	13	0	1	12	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0007	4177	9	8	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0008	4177	8	1	1	3	1	2	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0009	4173	8	7	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0010	4177	6	0	0	6	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0011	4173	6	5	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0012	4177	5	1	0	4	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0013	4175	5	5	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0014	4192	4	1	1	2	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0015	4190	3	2	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0016	4175	3	0	2	0	1	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0017	4183	3	1	0	2	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0018	4190	2	0	2	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0019	4176	2	1	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0020	4176	2	1	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636