JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ROCK2_chr2_11174759_11349636	0/0	t0021	4175	2	0	0	0	2	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0022	4177	2	0	0	2	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0023	4173	2	0	0	1	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0024	4179	2	1	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0025	4175	2	1	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0026	4177	2	2	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	1/0	t0027	4179	2	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0028	4176	2	0	2	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0029	4176	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0030	4175	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0031	4171	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0032	4188	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0033	4180	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0034	4190	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0035	4192	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0036	4189	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0037	4188	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0038	4188	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0039	4186	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0040	4182	1	0	0	0	1	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0041	4188	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0042	4188	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0043	4188	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0044	4182	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0045	4188	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0046	4188	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0047	4192	1	0	0	0	1	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0048	4170	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0049	4167	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0050	4165	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0051	4175	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0052	4177	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0053	4177	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0054	4175	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0055	4177	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0056	4181	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0057	4175	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0058	4175	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0059	4175	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0060	4175	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0061	4175	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0062	4175	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0063	4176	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0064	4176	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0065	4174	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0066	4181	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0067	4177	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0068	4177	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0069	4179	1	0	0	1	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0070	4177	1	0	0	0	0	1	copy fasta	ROCK2	chr2	11174759	11349636