Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B3GNT9_chr16_67143104_67155998	0/0	t0007	1494	2	0	0	0	2	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0008	1494	2	0	0	2	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0009	1494	1	0	0	0	0	1	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0010	1494	1	0	0	1	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0011	1494	1	0	0	1	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNT9_chr16_67143104_67155998	0/0	t0012	1478	1	1	0	0	0	0	copy fasta	B3GNT9	chr16	67143104	67155998
B3GNTL1_chr17_82937149_83056770	0/0	t0001	1945	48	12	17	15	2	2	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0002	1945	47	8	8	21	3	7	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0003	1945	22	1	8	10	2	1	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0004	1945	19	7	2	8	1	1	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0005	1945	16	0	3	13	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0006	1945	14	0	6	5	2	1	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0007	1945	14	3	5	2	1	3	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0008	1945	11	0	0	11	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0009	1945	10	0	2	6	0	2	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0010	1944	8	4	0	4	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0011	1945	8	7	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0012	1945	6	3	3	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0013	1945	4	0	0	4	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0014	1944	4	2	0	2	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0015	1945	4	4	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0016	1945	2	2	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0017	1945	2	2	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0018	1945	2	2	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0019	1945	2	0	0	2	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0020	1944	2	2	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0021	1946	2	0	0	2	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0022	1945	2	0	0	2	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0023	1945	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0024	1945	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0025	1945	1	0	0	0	0	1	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0026	1946	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0027	1945	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0028	1945	1	0	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0029	1945	1	0	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0030	1945	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0031	1945	1	0	0	1	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0032	1945	1	0	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0033	1945	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0034	1945	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0035	1945	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0036	1945	1	0	0	0	1	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0037	1945	1	0	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0038	1945	1	0	1	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B3GNTL1_chr17_82937149_83056770	0/0	t0039	1945	1	1	0	0	0	0	copy fasta	B3GNTL1	chr17	82937149	83056770
B4GALNT1_chr12_57618409_57638201	0/0	t0001	3766	175	32	22	99	4	18	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/1	t0002	3766	88	7	23	39	5	13	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0003	3766	52	10	17	14	5	6	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	1/0	t0004	3766	12	8	3	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0005	3766	11	0	0	11	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201