JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ROCK2_chr2_11174759_11349636	0/0	t0071	4175	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0072	4179	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0073	4177	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0074	4177	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0075	4181	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0076	4178	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0077	4170	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0078	4177	1	0	1	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROCK2_chr2_11174759_11349636	0/0	t0079	4188	1	1	0	0	0	0	copy fasta	ROCK2	chr2	11174759	11349636
ROGDI_chr16_4791968_4807633	1/0	t0001	555	232	77	31	98	7	18	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/1	t0002	555	155	8	39	74	8	25	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0003	555	11	2	2	2	3	2	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0004	555	5	5	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0005	555	3	0	0	3	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0006	555	2	2	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0007	555	2	0	0	2	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0008	555	2	1	0	0	0	1	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0009	555	1	0	0	1	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROGDI_chr16_4791968_4807633	0/0	t0010	555	1	1	0	0	0	0	copy fasta	ROGDI	chr16	4791968	4807633
ROM1_chr11_62608257_62620116	0/1	t0001	303	271	65	61	105	11	28	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	1/0	t0002	303	28	23	3	0	1	0	copy fasta	ROM1	chr11	62608257	62620116
ROM1_chr11_62608257_62620116	0/0	t0003	303	1	0	0	1	0	0	copy fasta	ROM1	chr11	62608257	62620116
ROMO1_chr20_35694405_35705980	1/1	t0001	127	323	89	63	127	16	26	copy fasta	ROMO1	chr20	35694405	35705980
ROMO1_chr20_35694405_35705980	0/0	t0002	127	23	0	1	6	2	14	copy fasta	ROMO1	chr20	35694405	35705980
ROMO1_chr20_35694405_35705980	0/0	t0003	127	3	0	0	3	0	0	copy fasta	ROMO1	chr20	35694405	35705980
ROMO1_chr20_35694405_35705980	0/0	t0004	127	2	2	0	0	0	0	copy fasta	ROMO1	chr20	35694405	35705980
ROMO1_chr20_35694405_35705980	0/0	t0005	127	1	1	0	0	0	0	copy fasta	ROMO1	chr20	35694405	35705980
ROPN1B_chr3_125964178_125988454	1/1	t0001	416	446	90	82	212	16	44	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	t0002	416	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1B_chr3_125964178_125988454	0/0	t0003	416	1	1	0	0	0	0	copy fasta	ROPN1B	chr3	125964178	125988454
ROPN1L_chr5_10436879_10470026	0/1	t0001	369	338	65	60	158	14	40	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	1/0	t0002	369	32	24	7	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	t0003	369	2	0	0	2	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	t0004	369	1	1	0	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1L_chr5_10436879_10470026	0/0	t0005	369	1	0	1	0	0	0	copy fasta	ROPN1L	chr5	10436879	10470026
ROPN1_chr3_123964015_123997124	1/1	t0001	356	415	90	70	189	16	48	copy fasta	ROPN1	chr3	123964015	123997124
ROPN1_chr3_123964015_123997124	0/0	t0002	356	1	0	0	1	0	0	copy fasta	ROPN1	chr3	123964015	123997124
ROR1_chr1_63769017_64186498	0/0	t0001	3044	34	23	4	2	0	5	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0002	3044	19	10	4	2	1	2	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0003	3044	9	0	6	0	2	1	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0004	3044	7	6	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0005	3044	6	5	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0006	3045	4	2	2	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0007	3044	2	2	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0008	3047	2	2	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0009	3045	2	2	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0010	3040	2	2	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0011	3044	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0012	3047	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0013	3047	1	0	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498