JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ROR1_chr1_63769017_64186498	0/0	t0014	3044	1	0	0	0	1	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0015	3044	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0016	3044	1	0	1	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0017	3044	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0018	3040	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR1_chr1_63769017_64186498	0/0	t0019	3044	1	1	0	0	0	0	copy fasta	ROR1	chr1	63769017	64186498
ROR2_chr9_91717601_91955228	0/0	t0001	1323	73	17	17	29	3	7	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	1/0	t0002	1327	55	20	11	11	3	9	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/1	t0003	1327	44	17	3	20	1	2	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0004	1327	24	1	1	17	3	2	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0005	1327	8	8	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0006	1327	5	4	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0007	1337	4	0	0	4	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0008	1327	3	3	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0009	1327	2	1	1	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0010	1327	2	2	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0011	1327	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0012	1327	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0013	1327	1	0	0	1	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0014	1327	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0015	1327	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
ROR2_chr9_91717601_91955228	0/0	t0016	1327	1	1	0	0	0	0	copy fasta	ROR2	chr9	91717601	91955228
RORA_chr15_60483284_61234302	0/0	t0001	9258	9	5	0	1	0	3	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0002	9248	8	1	3	1	2	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0003	9243	8	8	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0004	9249	6	6	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0005	9252	5	0	1	1	2	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0006	9254	5	1	1	0	0	3	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0007	9261	5	0	2	1	0	2	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0008	9262	4	4	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0009	9269	4	2	2	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0010	9256	3	2	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0011	9260	3	0	2	0	0	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0012	9266	3	3	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0013	9267	3	1	2	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0014	9255	2	1	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0015	9255	2	2	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0016	9252	2	0	2	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0017	9254	2	0	1	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0018	9266	2	2	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0019	9258	2	1	0	0	0	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0020	9263	2	1	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0021	9258	2	2	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0022	9260	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0023	9189	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0024	9262	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0025	9249	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0026	9249	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0027	9255	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0028	9252	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302