JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RORA_chr15_60483284_61234302	0/0	t0029	9263	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0030	9246	1	0	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0031	9248	1	0	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0032	9250	1	0	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0033	9252	1	0	0	0	0	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0034	9254	1	0	0	0	0	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0035	9256	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0036	9256	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0037	9258	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0038	9258	1	0	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0039	9256	1	0	0	0	0	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0040	9264	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0041	9258	1	0	0	0	0	1	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0042	9271	1	0	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0043	9265	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0044	9262	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0045	9258	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0046	9263	1	0	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0047	9264	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0048	9265	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0049	9265	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0050	9270	1	0	1	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0051	9246	1	0	0	1	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0052	9260	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0053	9264	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0054	9266	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0055	9254	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0056	9255	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORA_chr15_60483284_61234302	0/0	t0057	9258	1	1	0	0	0	0	copy fasta	RORA	chr15	60483284	61234302
RORB_chr9_74492335_74698177	0/0	t0001	8202	64	10	16	23	6	9	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0002	8203	18	1	2	13	0	2	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0003	8202	12	1	1	7	1	2	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0004	8202	11	4	4	2	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0005	8203	8	0	0	8	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/1	t0006	8203	8	1	5	0	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0007	8202	7	6	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0008	8203	5	0	0	5	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0009	8203	5	0	2	3	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0010	8202	4	4	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0011	8202	4	0	3	0	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0012	8202	4	3	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0013	8199	4	4	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0014	8199	4	4	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0015	8202	3	3	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	1/0	t0016	8202	3	2	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0017	8202	3	3	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0018	8202	3	2	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0019	8202	3	3	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0020	8202	2	2	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0021	8202	2	2	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177