JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RORB_chr9_74492335_74698177	0/0	t0022	8203	2	0	2	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0023	8202	2	0	1	0	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0024	8202	2	0	0	1	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0025	8203	2	0	0	2	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0026	8203	1	0	0	0	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0027	8202	1	0	0	0	1	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0028	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0029	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0030	8203	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0031	8203	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0032	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0033	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0034	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0035	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0036	8203	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0037	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0038	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0039	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0040	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0041	8202	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0042	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0043	8202	1	0	0	0	0	1	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0044	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0045	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0046	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0047	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0048	8202	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0049	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0050	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0051	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0052	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0053	8202	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0054	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0055	8203	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0056	8199	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0057	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0058	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0059	8199	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0060	8202	1	1	0	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0061	8203	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0062	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0063	8182	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0064	8202	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0065	8203	1	0	0	1	0	0	copy fasta	RORB	chr9	74492335	74698177
RORB_chr9_74492335_74698177	0/0	t0066	8202	1	0	1	0	0	0	copy fasta	RORB	chr9	74492335	74698177
RORC_chr1_151801071_151836802	0/0	t0001	1440	162	38	33	59	6	26	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	1/0	t0002	1440	119	30	18	60	0	10	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/1	t0003	1440	119	12	29	60	8	9	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0004	1440	11	0	0	11	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0005	1440	4	0	2	0	2	0	copy fasta	RORC	chr1	151801071	151836802