JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RORC_chr1_151801071_151836802	0/0	t0006	1440	3	3	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0007	1440	2	2	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0008	1440	2	0	0	2	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0009	1440	1	0	0	1	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0010	1440	1	0	0	1	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0011	1440	1	1	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0012	1440	1	1	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0013	1440	1	0	0	1	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0014	1440	1	0	0	0	0	1	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0015	1440	1	0	0	1	0	0	copy fasta	RORC	chr1	151801071	151836802
RORC_chr1_151801071_151836802	0/0	t0016	1440	1	1	0	0	0	0	copy fasta	RORC	chr1	151801071	151836802
ROS1_chr6_117282353_117430942	1/0	t0001	1426	114	7	26	66	2	12	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0002	1425	81	6	21	48	3	3	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/1	t0003	1423	57	31	9	5	4	7	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0004	1424	7	1	4	0	1	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0005	1423	7	4	0	2	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0006	1423	6	3	1	0	0	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0007	1425	6	6	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0008	1425	4	2	1	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0009	1425	4	2	0	1	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0010	1426	3	0	0	1	1	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0011	1425	3	0	1	0	0	2	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0012	1425	2	0	0	2	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0013	1424	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0014	1423	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0015	1424	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0016	1425	2	2	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0017	1426	2	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0018	1424	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0019	1425	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0020	1423	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0021	1425	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0022	1423	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0023	1425	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0024	1426	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0025	1425	1	0	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0026	1425	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0027	1425	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0028	1426	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0029	1425	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0030	1425	1	0	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0031	1426	1	0	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0032	1423	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0033	1423	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0034	1425	1	1	0	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	t0035	1425	1	0	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
RP1L1_chr8_10601349_10660143	0/0	t0001	812	82	7	11	59	1	4	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0002	812	79	4	17	51	3	4	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0003	812	78	29	22	10	5	12	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0004	812	52	0	9	29	0	14	copy fasta	RP1L1	chr8	10601349	10660143