JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RP1L1_chr8_10601349_10660143	0/1	t0005	812	30	9	11	5	1	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0006	812	17	12	0	4	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0007	812	15	5	1	3	2	4	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0008	812	14	3	3	3	1	4	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0009	812	13	13	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	1/0	t0010	812	4	3	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0011	812	3	3	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0012	812	3	0	2	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0013	811	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0014	812	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0015	811	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0016	811	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0017	812	2	1	0	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0018	812	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0019	812	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0020	812	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0021	812	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0022	812	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0023	812	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0024	812	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0025	812	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0026	812	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0027	812	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0028	812	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0029	812	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	t0030	812	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1_chr8_54611096_54635834	1/1	t0001	601	314	58	49	167	7	31	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	t0002	603	86	19	26	23	6	12	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	t0003	602	28	8	9	9	1	1	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	t0004	590	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	t0005	601	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP2_chrX_46832043_46887358	0/1	t0001	2648	240	57	43	106	11	22	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	1/0	t0002	2648	16	10	0	5	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0003	2648	6	6	0	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0004	2651	3	2	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0005	2647	2	0	0	0	0	2	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0006	2648	2	0	0	2	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0007	2647	1	0	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0008	2648	1	0	1	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0009	2648	1	0	1	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0010	2648	1	0	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	t0011	2648	1	1	0	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP9_chr7_33089797_33114404	1/1	t0001	470	436	91	75	207	14	47	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	t0002	470	3	3	0	0	0	0	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	t0003	470	3	0	0	3	0	0	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	t0004	470	1	0	1	0	0	0	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	t0005	470	1	0	0	0	0	1	copy fasta	RP9	chr7	33089797	33114404
RPA1_chr17_1825005_1905082	0/1	t0001	2997	144	17	42	67	8	9	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0002	3021	70	5	8	47	1	9	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0003	2996	31	19	4	2	0	6	copy fasta	RPA1	chr17	1825005	1905082