JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPA1_chr17_1825005_1905082	0/0	t0004	2996	24	2	8	9	0	5	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0005	2996	17	0	0	17	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0006	2996	17	7	3	0	4	3	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	1/0	t0007	2997	13	7	1	3	0	1	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0008	2997	11	0	0	11	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0009	2997	9	9	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0010	2997	6	0	0	6	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0011	2997	5	5	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0012	2997	5	0	0	3	0	2	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0013	2997	4	0	0	4	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0014	3021	4	0	4	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0015	3021	3	3	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0016	2996	2	0	0	2	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0017	2997	2	1	1	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0018	2996	2	2	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0019	2997	2	2	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0020	3021	2	0	0	0	0	2	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0021	2997	2	2	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0022	2997	2	1	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0023	3021	2	0	2	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0024	3021	2	0	0	2	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0025	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0026	2996	1	0	1	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0027	2996	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0028	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0029	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0030	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0031	2996	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0032	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0033	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0034	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0035	2997	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0036	3021	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0037	3021	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0038	3021	1	0	1	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0039	3021	1	0	0	0	0	1	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0040	3021	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0041	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0042	2996	1	0	0	0	1	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0043	2996	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0044	2997	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	t0045	2997	1	0	1	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA2_chr1_27886524_27919575	1/1	t0001	772	165	27	46	63	4	23	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0002	772	154	37	24	67	8	18	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0003	772	19	18	0	0	0	1	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0004	772	10	0	4	0	3	3	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0005	772	4	0	2	0	2	0	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0006	772	4	4	0	0	0	0	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0007	772	3	0	0	3	0	0	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0008	772	2	2	0	0	0	0	copy fasta	RPA2	chr1	27886524	27919575