JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPA2_chr1_27886524_27919575	0/0	t0009	772	1	0	0	1	0	0	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0010	772	1	0	0	0	0	1	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	t0011	772	1	0	0	0	1	0	copy fasta	RPA2	chr1	27886524	27919575
RPA3_chr7_7631518_7723607	0/1	t0001	1655	170	23	37	77	5	27	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0002	1655	28	17	3	5	0	3	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0003	1655	23	0	6	14	2	1	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	1/0	t0004	1655	21	3	8	4	0	5	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0005	1653	16	16	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0006	1655	6	6	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0007	1655	6	6	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0008	1653	5	5	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0009	1655	5	0	0	5	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0010	1655	4	0	0	3	1	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0011	1655	3	0	1	1	0	1	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0012	1655	3	3	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0013	1655	3	1	2	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0014	1655	2	1	1	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0015	1655	2	1	1	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0016	1655	2	0	0	0	0	2	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0017	1655	1	0	0	1	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0018	1655	1	0	1	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0019	1655	1	1	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0020	1655	1	1	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0021	1653	1	1	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0022	1655	1	1	0	0	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0023	1655	1	0	0	1	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0024	1655	1	0	0	1	0	0	copy fasta	RPA3	chr7	7631518	7723607
RPA3_chr7_7631518_7723607	0/0	t0025	1655	1	0	0	0	0	1	copy fasta	RPA3	chr7	7631518	7723607
RPA4_chrX_96878908_96890467	0/0	t0001	774	135	39	19	72	3	2	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	1/1	t0002	775	83	8	17	29	7	20	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0003	772	53	5	15	30	1	2	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0004	773	18	6	1	7	1	3	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0005	774	7	6	1	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0006	776	5	0	0	5	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0007	774	4	4	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0008	773	2	2	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0009	778	2	2	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0010	779	2	2	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0011	772	2	0	0	0	1	1	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0012	774	1	1	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0013	774	1	0	0	1	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0014	772	1	1	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0015	771	1	0	0	1	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0016	774	1	1	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	t0017	774	1	1	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPAIN_chr17_5415182_5437877	1/1	t0001	336	220	83	55	48	8	24	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	t0002	336	176	8	26	120	4	18	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	t0003	336	2	0	0	0	0	2	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	t0004	336	1	0	1	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	t0005	336	1	1	0	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877