JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPAP1_chr15_41512176_41549257	0/1	t0001	482	302	71	64	126	12	28	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0002	481	89	9	10	64	2	4	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0003	482	6	3	0	0	0	3	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	1/0	t0004	482	6	5	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0005	482	5	3	2	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0006	482	2	0	0	0	0	2	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0007	482	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0008	482	1	0	0	0	0	1	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0009	481	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	t0010	481	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP2_chr1_92294059_92407056	0/1	t0001	15061	31	1	14	6	1	8	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0002	15069	30	6	14	6	2	2	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0003	15064	12	6	1	2	2	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0004	15070	11	1	5	4	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0005	15060	8	8	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0006	15056	6	0	2	1	3	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0007	15060	4	4	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0008	15060	4	4	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0009	15061	4	4	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0010	15061	3	0	3	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0011	15057	3	3	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0012	15061	3	3	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0013	15065	2	1	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0014	15068	2	0	0	0	1	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0015	15064	2	2	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0016	15064	2	1	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0017	15060	2	2	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0018	15060	2	2	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0019	15061	2	0	2	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0020	15062	2	0	2	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0021	15054	2	1	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0022	15054	2	0	2	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0023	15056	2	2	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0024	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	1/0	t0025	15061	1	0	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0026	15069	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0027	15064	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0028	15064	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0029	15063	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0030	15063	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0031	15069	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0032	15065	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0033	15072	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0034	15066	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0035	15069	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0036	15069	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0037	15069	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0038	15071	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0039	15071	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0040	15070	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056