JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPAP2_chr1_92294059_92407056	0/0	t0041	15036	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0042	15066	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0043	15066	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0044	15064	1	0	0	0	1	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0045	15069	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0046	15065	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0047	15064	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0048	15064	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0049	15065	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0050	15066	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0051	15072	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0052	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0053	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0054	15062	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0055	15060	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0056	15069	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0057	15060	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0058	15063	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0059	15061	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0060	15061	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0061	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0062	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0063	15061	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0064	15062	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0065	15061	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0066	15061	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0067	15060	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0068	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0069	15058	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0070	15058	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0071	15054	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0072	15062	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0073	15057	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	t0074	15061	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP3_chr12_47656249_47711030	0/1	t0001	2345	173	39	30	82	7	14	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0002	2342	69	16	23	22	0	8	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0003	2345	67	1	3	48	4	11	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	1/0	t0004	2342	25	8	0	11	0	5	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0005	2342	13	0	0	13	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0006	2345	11	1	6	0	1	3	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0007	2345	9	6	3	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0008	2345	8	7	1	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0009	2345	7	7	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0010	2342	4	4	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0011	2345	2	0	0	2	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0012	2345	2	0	2	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0013	2345	2	0	1	0	1	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0014	2342	2	2	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0015	8413	2	0	0	2	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0016	2342	2	0	1	0	1	0	copy fasta	RPAP3	chr12	47656249	47711030