Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
B4GALNT1_chr12_57618409_57638201	0/0	t0006	3766	7	0	0	7	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0007	3766	6	6	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0008	3766	6	5	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0009	3766	5	4	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0010	3766	4	3	0	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0011	3766	3	0	0	3	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0012	3766	3	0	3	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0013	3766	3	2	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0014	3766	3	3	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0015	3766	3	3	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0016	3766	3	2	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0017	3766	3	3	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0018	3766	2	2	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0019	3766	2	0	2	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0020	3766	2	2	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0021	3766	2	1	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0022	3766	1	1	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0023	3766	1	1	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0024	3766	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0025	3766	1	1	0	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0026	3766	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0027	3766	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0028	3766	1	0	0	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0029	3766	1	0	0	1	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0030	3766	1	0	0	0	0	1	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0031	3766	1	0	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT1_chr12_57618409_57638201	0/0	t0032	3766	1	0	1	0	0	0	copy fasta	B4GALNT1	chr12	57618409	57638201
B4GALNT2_chr17_49127769_49181840	0/1	t0001	7137	122	8	20	79	4	10	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0002	7127	100	24	22	35	2	17	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0003	7137	37	3	10	18	2	4	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0004	7158	21	1	7	5	2	6	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0005	7158	9	8	1	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0006	7137	8	0	3	0	2	3	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0007	7127	6	0	0	5	0	1	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0008	7137	6	4	2	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0009	7137	5	5	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0010	7145	5	5	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0011	7154	3	3	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0012	7137	3	3	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	1/0	t0013	7137	3	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0014	7154	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0015	7127	2	0	0	2	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0016	7127	2	0	0	2	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0017	7137	2	0	0	2	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0018	7155	2	0	0	2	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0019	7137	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0020	7137	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0021	7156	2	2	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0022	7127	1	0	0	1	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840
B4GALNT2_chr17_49127769_49181840	0/0	t0023	7127	1	1	0	0	0	0	copy fasta	B4GALNT2	chr17	49127769	49181840