JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPAP3_chr12_47656249_47711030	0/0	t0017	2345	2	0	0	2	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0018	2345	2	0	0	0	2	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0019	2345	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0020	2342	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0021	2334	1	0	1	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0022	2345	1	0	1	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0023	2345	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0024	2345	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0025	2345	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0026	2345	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0027	2345	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0028	2342	1	0	0	0	0	1	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0029	2342	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	t0030	2345	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPE65_chr1_68423822_68454954	0/0	t0001	1006	197	34	24	117	5	17	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	1/1	t0002	1004	164	39	31	63	11	18	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0003	1006	87	19	21	35	2	10	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0004	1006	3	3	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0005	1004	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0006	1006	1	1	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0007	1006	1	0	0	0	0	1	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0008	1004	1	1	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	t0009	1006	1	1	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPEL1_chr10_103240887_103253016	1/0	t0001	1444	126	19	19	62	4	21	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0002	1447	91	23	20	44	2	2	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0003	1446	51	17	15	13	4	2	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0004	1447	38	7	7	10	5	9	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0005	1445	34	16	3	15	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0006	1443	8	0	4	3	1	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0007	1445	6	0	2	0	0	4	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0008	1445	3	3	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0009	1446	3	0	0	3	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0010	1446	2	0	0	0	2	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0011	1446	2	0	2	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0012	1447	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0013	1475	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0014	1446	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0015	1447	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0016	1445	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0017	1447	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0018	1447	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0019	1445	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0020	1445	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0021	1444	1	1	0	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	t0022	1446	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPE_chr2_209997638_210027260	1/0	t0001	2494	244	47	40	125	11	20	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/1	t0002	2494	76	7	19	33	5	11	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0003	2494	14	13	1	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0004	2500	8	8	0	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0005	2495	6	4	0	0	0	2	copy fasta	RPE	chr2	209997638	210027260