JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPE_chr2_209997638_210027260	0/0	t0006	2494	4	0	4	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0007	2494	3	0	0	3	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0008	2494	3	0	0	3	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0009	2493	3	3	0	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0010	2494	2	0	2	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0011	2494	2	0	0	2	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0012	2494	1	0	0	0	0	1	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0013	2500	1	1	0	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0014	2494	1	0	0	1	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0015	2494	1	1	0	0	0	0	copy fasta	RPE	chr2	209997638	210027260
RPE_chr2_209997638_210027260	0/0	t0016	2494	1	0	0	1	0	0	copy fasta	RPE	chr2	209997638	210027260
RPF1_chr1_84474266_84503352	1/1	t0001	899	320	81	58	133	9	37	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	t0002	899	23	5	6	10	1	1	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	t0003	899	3	0	0	3	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	t0004	899	2	0	0	0	0	2	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	t0005	899	1	1	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	t0006	899	1	1	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF2_chr6_110977038_111033263	0/0	t0001	2751	119	5	26	67	3	18	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0002	2751	84	14	9	46	3	12	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0003	2756	57	16	8	25	0	8	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	1/1	t0004	2751	41	14	15	1	4	5	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0005	2751	10	0	0	10	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0006	2757	8	1	3	2	0	2	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0007	2756	7	7	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0008	2751	5	5	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0009	2751	3	3	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0010	2756	3	2	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0011	2751	2	2	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0012	2751	2	0	0	2	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0013	2756	2	1	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0014	2756	2	0	0	2	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0015	2751	2	2	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0016	2751	1	0	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0017	2751	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0018	2751	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0019	2751	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0020	2752	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0021	2757	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0022	2757	1	0	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0023	2757	1	0	0	0	0	1	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0024	2751	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0025	2756	1	0	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0026	2756	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0027	2756	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	t0028	2751	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPGRIP1L_chr16_53593153_53708859	0/1	t0001	3988	132	28	9	72	4	18	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	1/0	t0002	3988	98	5	23	57	5	7	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0003	3988	49	22	19	5	1	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0004	3988	31	0	0	24	0	7	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0005	3988	21	21	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859