JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPGRIP1L_chr16_53593153_53708859	0/0	t0006	3988	7	0	0	7	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0007	3988	7	7	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0008	3988	4	0	0	0	0	4	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0009	3988	2	0	0	0	0	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0010	3988	2	0	0	0	0	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0011	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0012	3988	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0013	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0014	3988	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0015	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0016	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0017	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0018	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0019	3988	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0020	3988	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	t0021	3988	1	0	1	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1_chr14_21275083_21356301	1/1	t0001	201	313	72	55	128	14	42	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	t0002	201	7	7	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	t0003	201	6	5	1	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	t0004	201	4	4	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	t0005	201	2	2	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGR_chrX_38279408_38332509	0/0	t0001	1274	116	23	9	74	1	9	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	1/1	t0002	1275	94	23	24	34	7	4	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0003	1274	37	12	9	10	1	5	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0004	1275	28	0	8	4	4	12	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0005	1274	14	9	4	0	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0006	1274	4	4	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0007	1274	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0008	1275	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0009	1276	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0010	1275	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0011	1276	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0012	1274	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0013	1274	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	t0014	1277	1	0	0	0	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPH3AL_chr17_207389_357807	0/1	t0001	1772	36	8	5	13	5	4	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0002	1772	14	2	2	9	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0003	1772	10	1	1	4	1	3	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0004	1772	9	0	6	3	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0005	1772	5	3	1	0	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0006	1772	5	5	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0007	1772	5	0	1	3	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0008	1772	3	1	1	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0009	1774	3	0	2	0	1	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0010	1772	3	3	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0011	1772	3	0	0	3	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0012	1772	3	0	0	3	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0013	1772	3	0	3	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0014	1772	3	0	0	2	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0015	1772	2	0	0	1	1	0	copy fasta	RPH3AL	chr17	207389	357807