JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPH3AL_chr17_207389_357807	0/0	t0016	1774	2	0	0	0	2	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0017	1774	2	2	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0018	1774	2	2	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0019	1772	2	0	0	2	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0020	1774	1	0	0	0	1	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0021	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0022	1772	1	0	1	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0023	1772	1	0	0	0	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0024	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0025	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0026	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0027	1772	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0028	1774	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0029	1772	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0030	1772	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0031	1772	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0032	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0033	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0034	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0035	1772	1	0	0	0	1	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0036	1774	1	0	1	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	t0037	1772	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3A_chr12_112786748_112903881	0/0	t0001	2508	5	0	1	4	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0002	2508	4	1	0	3	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0003	2532	4	0	1	2	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0004	2544	4	0	2	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	1/0	t0005	2506	3	0	0	0	1	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0006	2506	3	0	0	3	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0007	2518	3	0	1	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0008	2530	3	3	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0009	2534	3	3	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0010	2536	3	3	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0011	2546	3	0	1	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0012	2550	3	0	1	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0013	2529	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0014	2508	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0015	2508	2	0	0	1	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0016	2510	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0017	2510	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0018	2516	2	0	2	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0019	2518	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0020	2524	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0021	2526	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0022	2526	2	0	1	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0023	2520	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0024	2528	2	1	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0025	2528	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0026	2530	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0027	2532	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/1	t0028	2532	2	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881