JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPH3A_chr12_112786748_112903881	0/0	t0029	2534	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0030	2534	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0031	2536	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0032	2536	2	1	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0033	2530	2	0	1	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0034	2538	2	0	1	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0035	2536	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0036	2540	2	1	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0037	2538	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0038	2538	2	1	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0039	2542	2	0	0	1	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0040	2544	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0041	2540	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0042	2548	2	0	2	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0043	2548	2	2	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0044	2552	2	0	1	0	1	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0045	2550	2	0	1	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0046	2552	2	0	2	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0047	2537	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0048	2526	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0049	2532	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0050	2519	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0051	2523	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0052	2525	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0053	2529	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0054	2527	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0055	2527	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0056	2529	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0057	2533	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0058	2533	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0059	2537	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0060	2537	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0061	2537	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0062	2539	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0063	2543	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0064	2541	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0065	2539	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0066	2539	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0067	2543	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0068	2541	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0069	2547	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0070	2549	1	0	0	0	1	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0071	2549	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0072	2611	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0073	2506	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0074	2506	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0075	2506	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0076	2500	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0077	2504	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0078	2506	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881