JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPH3A_chr12_112786748_112903881	0/0	t0129	2544	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0130	2538	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0131	2536	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0132	2536	1	0	0	0	1	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0133	2536	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0134	2534	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0135	2538	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0136	2536	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0137	2550	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0138	2540	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0139	2538	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0140	2538	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0141	2536	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0142	2532	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0143	2540	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0144	2540	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0145	2540	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0146	2540	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0147	2540	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0148	2538	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0149	2538	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0150	2542	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0151	2542	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0152	2542	1	0	0	0	1	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0153	2540	1	0	0	0	1	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0154	2540	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0155	2540	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0156	2540	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0157	2556	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0158	2544	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0159	2542	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0160	2546	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0161	2544	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0162	2544	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0163	2542	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0164	2542	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0165	2546	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0166	2544	1	0	0	0	1	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0167	2546	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0168	2546	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0169	2546	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0170	2546	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0171	2544	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0172	2540	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0173	2548	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0174	2546	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0175	2542	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0176	2548	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0177	2548	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0178	2552	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881