JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
RPH3A_chr12_112786748_112903881	0/0	t0179	2552	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0180	2550	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0181	2554	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0182	2556	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0183	2556	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0184	2558	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0185	2556	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0186	2556	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0187	2562	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0188	2560	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0189	2564	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0190	2568	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0191	2566	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0192	2572	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0193	2596	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0194	2544	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0195	2562	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0196	2530	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0197	2534	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0198	2530	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0199	2555	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0200	2575	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0201	2542	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0202	2546	1	0	0	1	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	t0203	2534	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPIA_chr2_88686673_88755929	1/0	t0001	878	280	66	58	115	10	30	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/1	t0002	878	66	9	8	28	7	13	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	t0003	875	17	17	0	0	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	t0004	878	1	0	0	0	1	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	t0005	878	1	1	0	0	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	t0006	878	1	1	0	0	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	t0007	878	1	0	0	1	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	t0008	878	1	0	0	0	0	1	copy fasta	RPIA	chr2	88686673	88755929
RPL10A_chr6_35463401_35475780	1/1	t0001	65	370	54	70	192	11	41	copy fasta	RPL10A	chr6	35463401	35475780
RPL10A_chr6_35463401_35475780	0/0	t0002	65	32	23	4	1	1	3	copy fasta	RPL10A	chr6	35463401	35475780
RPL10A_chr6_35463401_35475780	0/0	t0003	65	2	2	0	0	0	0	copy fasta	RPL10A	chr6	35463401	35475780
RPL10A_chr6_35463401_35475780	0/0	t0004	65	1	1	0	0	0	0	copy fasta	RPL10A	chr6	35463401	35475780
RPL10A_chr6_35463401_35475780	0/0	t0005	65	1	0	0	1	0	0	copy fasta	RPL10A	chr6	35463401	35475780
RPL10L_chr14_46646010_46656781	1/1	t0001	128	385	94	74	163	16	36	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	t0002	128	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10_chrX_154393377_154407332	1/1	t0001	1520	163	6	34	87	10	24	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0002	1520	63	33	19	7	1	3	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0003	1520	13	13	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0004	1510	11	11	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0005	1520	4	4	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0006	1520	3	0	1	0	2	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0007	1207	2	2	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0008	1520	2	1	1	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0009	1510	2	2	0	0	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	t0010	1523	2	0	0	0	0	2	copy fasta	RPL10	chrX	154393377	154407332